AT2G42370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits to 191 proteins in 60 species: Archae - 3; Bacteria - 23; Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17643334..17645533 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 82435.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.41 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||
| Length | 715 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPPANPFAS REQDTVTILR NLIKQATLEE EVSEASETHS VPNKIRILES VSDEMRKSQE NGSDQKQLSE EDEIDILDSK AMSFSFSCHG GGPKRKKCND 101: KKRKQQEEKS KKKLKVLVET LKLVPFKPLK TLDFACYESL LKTLGLWDFV HLEFDQDMDY DLVAQLIASY SAGGKCSYIN GSRIKLSRAD LARSLKLPNK 201: KERVVILDED KEFLESDESI SVVEDVISNW MLLHCDDAWM MPDEVVEWMK GIKKKQLDKL DWAGLMWFMV EKELKAEPPL GDCFYASHLQ MVIRSQKIDL 301: FKERDLKVKD DIAALNLGMD DGATDSKKEN CVEESTTKLN LGQVIVSEMA ATMELYHEEQ AIDLEENKEQ PMDLKEAKEE GDEMEWRQPY EKNGTRHRKV 401: GENEILEDEI EKDGEKQEGG FLLFRNGKTL HQENLMLGDT STLGYNSGLQ VHGSSTCDFL APRAVMHMVP GRSHFGNDNK REFGHENDIS YHFDNPASTK 501: RLKTPSWDDK PVPFDICMEQ IKHLADKAKL SYVEKDQACG ESNMREQMLQ NELQRREDII QQLHKESYEE LHKKNVEIYK LENELRMMTS VLAWYQKALK 601: ESQKACRKHR KVCPLLDKPI YIDVKGTGGL VLSTAEIEKL RLKEEKEEGM RRVLIERQVK EVGSLWIKEY EVNLKKKVEL LDGKLIGFQN KMKLLKETIS 701: RRESISARFD ATSNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)