AT2G42150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding bromodomain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT3G57980.1); Has 2988 Blast hits to 2572 proteins in 258 species: Archae - 0; Bacteria - 77; Metazoa - 1744; Fungi - 298; Plants - 259; Viruses - 10; Other Eukaryotes - 600 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17572463..17574564 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70449.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.61 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||||||||||||||||||
| Length | 631 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKPENDVTL TEKQTWSTWE ELLLACAVHR HGTESWNSVS AEIQKLSPNL CSLTASACRH KYFDLKSRFT QELPVPESVA EISTAPWLEE LRKLRVDELR 101: REVEQYDLSI STLQSKVKQL EEEREMSFIK PDTETENLDL ERKKERSDSG EPVPNPPVQL MNETISPDPK EIGSENTERE EEMAGSGGGE SKLAGEDSCR 201: GSCESVEKEP TTNSERVEPV SVTELIESED GASRGEEITS DVQSSASLPR KGTSEPDKED QSPTSAKDFT VESQPLISFV EILLSHPCGS HFSRRLERQE 301: TIEYGTIIRE HVDFEIIRKR VEGGLYKSWR INFFRDLLLL VNNARVFYHR GSSEFKFAEQ LHQLVKKQMT TTLKGLSNRD EISISPPKEE VVAIPSSKPV 401: SSKPRMSVPN IVACRKRSAL AAKPLLLLPP GPDKKAKKTD HVVDYDEKPV SDKDGEASGK DDDDSLIVKI MTRGRTSSTG KVANRNDKNR DSSLNVDDSK 501: DKVKKTDEEK KGGSKKKRAA SFLRRMKVGS SDDTLKRSSA ADSSTTGKGG GAEQRKNNSN KADNKKTPIP KIRQTNKKAS PVKRSNNGRN SEREAAPSSS 601: SYPILAKRSR DAGEKEEASS YSPRLKKRAR R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)