AT2G41240.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix protein 100 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the basic helix-loop-helix transcription factor family protein. | ||||||||||||
| Computational Description (TAIR10) |
basic helix-loop-helix protein 100 (BHLH100); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to water deprivation, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Achaete-scute transcription factor related (InterPro:IPR015660), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56970.1); Has 850 Blast hits to 850 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 130; Fungi - 33; Plants - 678; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17198331..17199320 | ||||||||||||
| Molecular Weight (calculated) | 27090.00 Da | ||||||||||||
| IEP (calculated) | 5.96 | ||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||
| Length | 241 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKLSVSA 101: TVSQALKYIP ELQEQVKKLM KKKEELSFQI SGQRDLVYTD QNSKSEEGVT SYASTVSSTR LSETEVMVQI SSLQTEKCSF GNVLSGVEED GLVLVGASSS 201: RSHGERLFYS MHLQIKNGQV NSEELGDRLL YLYEKCGHSF T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)