suba logo
AT2G40910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.717
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G40920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AC002409EMBL:AY219123EMBL:AY219124EMBL:CP002685
EnsemblPlants:AT2G40910EnsemblPlants:AT2G40910.1entrez:818688GeneID:818688
Genevisible:Q3EBI7hmmpanther:PTHR31111HOGENOM:HOG000112509InParanoid:Q3EBI7
InterPro:IPR001810InterPro:IPR013187InterPro:IPR017451KEGG:ath:AT2G40910
OMA:ERKDIRYPaxDb:Q3EBI7Pfam:PF00646Pfam:PF08268
Pfam:Q3EBI7Pfscan:PS50181PhylomeDB:Q3EBI7PIR:T00755
PRIDE:Q3EBI7PRO:PR:Q3EBI7PROSITE:PS50181ProteinModelPortal:Q3EBI7
Proteomes:UP000006548RefSeq:NP_181623.2RefSeq:NP_973653.1SMART:SM00256
SUPFAM:SSF81383TAIR:AT2G40910TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.42897UniProt:Q3EBI7
Coordinates (TAIR10) chr2:-:17069938..17071554
Molecular Weight (calculated) 51311.40 Da
IEP (calculated) 7.59
GRAVY (calculated) -0.17
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRRRRDLKQ AAESEQEECQ SVPQVVSLRD SDQLQIMDEK GDNSLALLPA KLPMRMCSTR ERRKYTCEIP PDLLMEIVMR LPAKSMVRFK CISKQWSSLI
101: SCRYFCNSLF TSVTRKKQPH IHMCLVDHGG QRVLLSLSST SPDNTCYVVD QDLSLTGMGG FFLNLVRGLL CFSVREKACI YNPTTRQRLT LPAIKSDIIA
201: LKDERKDIRY YIGHDPVNDQ YKLVCTIGIS SAFFTNLKSE HWVFVLEAGG SWRKVRTLES YHPHAPSTVG QFINGSVVYY MAWLDMDTCA VVSFDITSEE
301: LTTIIVTLEA GDVALPAGRM KAGLIQYHGE IAVFDHTHLK EKFLVDLWVL KDAGMKKWSK KRLVLQPCQK HLVHDDIELV VKGTTQDGKV ILAPVNMCSQ
401: LYILCYDMGS NDLRKVEIKG VPDIWFDKEC YFDLKYSLDE SEDVIYLET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)