AT2G40440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.956 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BTB/POZ domain-containing protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT2G40450.1); Has 178 Blast hits to 120 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16889212..16891292 | ||||||||
| Molecular Weight (calculated) | 21600.90 Da | ||||||||
| IEP (calculated) | 5.15 | ||||||||
| GRAVY (calculated) | -0.24 | ||||||||
| Length | 194 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MATETNKELF VGGFAKILKE QRQVDVRLKA GDSGDEGAST SAHKLVLSAR SEVFKKMLES DEIKASAQLE TITLCEMKHE ELEAFIEFIY SDGSMLSAKE 101: KQHKMANKIE FIDSFAKYWK EKVGVDVLLK AGDQTDPIPA HKIILAASSE VLKQMIDSTS SASDPITFSE MTHDELYIPL LSSCTKVTFR IQNC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)