AT2G39620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G09040.1); Has 57584 Blast hits to 13450 proteins in 210 species: Archae - 0; Bacteria - 3; Metazoa - 36; Fungi - 107; Plants - 56697; Viruses - 0; Other Eukaryotes - 741 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16518968..16521478 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92677.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||||||||||
| Length | 836 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPINYTNLLL MLRECKNFRC LLQVHGSLIV SGLKPHNQLI NAYSLFQRQD LSRVIFDSVR DPGVVLWNSM IRGYTRAGLH REALGFFGYM SEEKGIDPDK 101: YSFTFALKAC AGSMDFKKGL RIHDLIAEMG LESDVYIGTA LVEMYCKARD LVSARQVFDK MHVKDVVTWN TMVSGLAQNG CSSAALLLFH DMRSCCVDID 201: HVSLYNLIPA VSKLEKSDVC RCLHGLVIKK GFIFAFSSGL IDMYCNCADL YAAESVFEEV WRKDESSWGT MMAAYAHNGF FEEVLELFDL MRNYDVRMNK 301: VAAASALQAA AYVGDLVKGI AIHDYAVQQG LIGDVSVATS LMSMYSKCGE LEIAEQLFIN IEDRDVVSWS AMIASYEQAG QHDEAISLFR DMMRIHIKPN 401: AVTLTSVLQG CAGVAASRLG KSIHCYAIKA DIESELETAT AVISMYAKCG RFSPALKAFE RLPIKDAVAF NALAQGYTQI GDANKAFDVY KNMKLHGVCP 501: DSRTMVGMLQ TCAFCSDYAR GSCVYGQIIK HGFDSECHVA HALINMFTKC DALAAAIVLF DKCGFEKSTV SWNIMMNGYL LHGQAEEAVA TFRQMKVEKF 601: QPNAVTFVNI VRAAAELSAL RVGMSVHSSL IQCGFCSQTP VGNSLVDMYA KCGMIESSEK CFIEISNKYI VSWNTMLSAY AAHGLASCAV SLFLSMQENE 701: LKPDSVSFLS VLSACRHAGL VEEGKRIFEE MGERHKIEAE VEHYACMVDL LGKAGLFGEA VEMMRRMRVK TSVGVWGALL NSSRMHCNLW LSNAALCQLV 801: KLEPLNPSHY SQDRRLGEVN NVSRIKKVPA CSWIEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)