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AT2G39540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Gibberellin-regulated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Gibberellin-regulated family protein; INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT1G10588.2); Has 475 Blast hits to 475 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 475; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0AYeggNOG:ENOG410YU8REMBL:AC004218EMBL:CP002685
EnsemblPlants:AT2G39540EnsemblPlants:AT2G39540.1entrez:818539GeneID:818539
Genevisible:O80641GO:GO:0005576GO:GO:0009740Gramene:AT2G39540.1
hmmpanther:PTHR23201hmmpanther:PTHR23201:SF10HOGENOM:HOG000240234InParanoid:O80641
InterPro:IPR003854KEGG:ath:AT2G39540OMA:GHRDECPPaxDb:O80641
Pfam:O80641Pfam:PF02704PhylomeDB:O80641PIR:T00564
PRO:PR:O80641ProteinModelPortal:O80641Proteomes:UP000006548RefSeq:NP_181486.1
TAIR:AT2G39540UniGene:At.53076UniProt:O80641
Coordinates (TAIR10) chr2:+:16500866..16501241
Molecular Weight (calculated) 9440.50 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.08
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MKLVVVQFFI ISLLLTSSFS VLSSADSSCG GKCNVRCSKA GQHEECLKYC NICCQKCNCV PSGTFGHKDE CPCYRDMKNS KGGSKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)