AT2G39490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.778 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 107 Blast hits to 102 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16487151..16488464 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44320.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEHKPDILS CLPLELLLYI ISFLPFESAR LTPLVSTRFR SVWNQAILVA HSHNGSIEDI SHAVSRFINN FDEHDPSKNT RKLELHVDKS TFVSTILAPH 101: NVMHMSFFFS GGSKKEESFC WRLEIDDQIP RRVDSSGFLV KTLCLDSVNS LTHEVVSSMV LEFSLLDSLK ICRCKRLTSL TIDSPTKLLH LSISGCPKLR 201: YLEIISFKLK TFHYQGSLPL IKIHEHFNLT KAVFDVTQGP SYYNNALDIG PLSLTIKNSQ SLTLCRWMFE EVIKPSISSS WRSFQFYKLQ ELRWIDNSMN 301: QEQINSLISF LKLCPSIERL FITIDSNTYS SNEEVSVNAD HARVVLRDLE VVKLEGFKSE EDKNQLIFAL QEIVSIDQPL LVLSSIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)