AT2G38100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.586 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proton-dependent oligopeptide transport (POT) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proton-dependent oligopeptide transport (POT) family protein; FUNCTIONS IN: amino acid transmembrane transporter activity, uracil transmembrane transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109); BEST Arabidopsis thaliana protein match is: peptide transporter 5 (TAIR:AT5G01180.1); Has 2766 Blast hits to 2715 proteins in 326 species: Archae - 0; Bacteria - 547; Metazoa - 329; Fungi - 2; Plants - 1871; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15948484..15950228 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57846.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.42 | ||||||||||||||||||||||||||||||||||||||||
| Length | 521 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVLSWAFTV AWFTLWMLML YLTNEMKLKF TDAAAIVNVF AGVSAIGHLG MQFLVDAFIG HFWMLCLSTL AFSFGFGFLA ISASPILSGN GQKGLFYVAL 101: TVISVGIFGR SISLGVFTED QLEDGRNKGN PAKLVSFVIG NVGNFVFLLL AAIAMPQISP WFVRFTIPSG CEVLAMLIFI SGACSYKRVK PGGSPLTTVF 201: RVFMASASKM SCAYSNNSSQ LYEKAECDQD IKPHTSSLRY LDRAAMILQT ESLEQQRKNR WKLCRVTEVE QTKSVIRTVP LFATSLISGI VFSLGNTFFL 301: EQANHMDSKF GSWNLPLPLL LLFSEAARLG SRELCVMAAK RHAIDFPESP KQTKTPYGIP VSIILSIFCC SIAAHVESRR LKVVSTQGLL HETVPMSVFW 401: LLPQYILLGS ITGIYENSFA LYLEETVPEE LSQYMVLLNV GVCGVGIMSN IALVSLVGSV SGGKWFQDTI NKSRVDNYYW VITVFCMFNL LLYFIVTYRY 501: TVCNKKDGAT QENDRRIIAS V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)