AT2G37730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.896 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT3G11420.1); Has 511 Blast hits to 500 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 144; Plants - 279; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15822186..15824538 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60375.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.81 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 532 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIFDPFKLH HKPPSIFPAT TVKPSHVLSL VAKFFFTICI FISVAMISFY IIFFGCSDCH HITGLRRLGP ENVNLTTNSS ASSSTIRRPN QSSEATDISH 101: IAFGIGGSIQ TWRDRSRYSE LWWRPNVTRG FIWLDEEPPL NMTWLSTSPP YQVSADTSRF SYTCWYGSRS AIRMARIIKE TFELGLTDVR WFIMGDDDTV 201: FFVDNLITVL NKYDHNQMYY IGGNSESVEQ DIVHSYAMAY GGGGIAISYP LAVELVKLLD GCIDRYASLY GSDQKIEACL SEIGVPLTKE LGFHQVDIRG 301: NPYGLLAAHP VAPLVTLHHL DYVDPIFPGT TQIDALRRLV SAYKTDPSRI IQHSFCHDQT RNWYVSVSWG YTIQIYPTLV TAKELETPFL TFKSWRTSSS 401: EPFSFDTRPI SEDPCERPLV YFLDRVYEVG SGQTLTTYRK HVEVGESTQC NSPDYSRANP VEFIDVSTTT LTPDLWKMAP RRQCCEIVNS EEDSESVINV 501: KIRHFNPLES VTPQSKHPND EWTDSVLSTE TI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)