AT2G37340.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : arginine/serine-rich zinc knuckle-containing protein 33 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15670372..15671584 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27843.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.47 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.44 | ||||||||||||||||||||||||||||
| Length | 249 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRDYAFVEF GDPRDADDAR HYLDGRDFDG SRITVEFSRG APRGSRDFDS RGPPPGAGRC FNCGVDGHWA RDCTAGDWKN KCYRCGERGH IERNCKNSPK 101: KLRRSGSYSR SPVRSRSPRR RRSPSRSLSR SRSYSRSRSP VRRRERSVEE RSRSPKRMDD SLSPRARDRS PVLDDEGSPK IIDGSPPPSP KLQKEVGSDR 201: DGGSPQDNGR NSVVSPVVGA GGDSSKEDRS PVDDDYEPNR TSPRGSESP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)