AT2G37320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G24000.1); Has 40972 Blast hits to 13911 proteins in 248 species: Archae - 0; Bacteria - 4; Metazoa - 85; Fungi - 62; Plants - 40344; Viruses - 0; Other Eukaryotes - 477 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15667223..15668725 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56347.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 500 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSCLRNYYCR AFGYKQSRSC YSRSLNREIA NESSEVERRA RSLRVLDIIS SKSGGVSNRQ DHFGFVQEFR QTDSWRFRGQ AISEDFDLSR TKNGVSSVLE 101: EVMLEDSSSS VKRDGWSFDA YGLSSAVRSC GLNRDFRTGS GFHCLALKGG FISDVYLGSS LVVLYRDSGE VENAYKVFEE MPERNVVSWT AMISGFAQEW 201: RVDICLKLYS KMRKSTSDPN DYTFTALLSA CTGSGALGQG RSVHCQTLHM GLKSYLHISN SLISMYCKCG DLKDAFRIFD QFSNKDVVSW NSMIAGYAQH 301: GLAMQAIELF ELMMPKSGTK PDAITYLGVL SSCRHAGLVK EGRKFFNLMA EHGLKPELNH YSCLVDLLGR FGLLQEALEL IENMPMKPNS VIWGSLLFSC 401: RVHGDVWTGI RAAEERLMLE PDCAATHVQL ANLYASVGYW KEAATVRKLM KDKGLKTNPG CSWIEINNYV FMFKAEDGSN CRMLEIVHVL HCLIDHMEFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)