AT2G37260.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WRKY family transcription factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.Loss of function allele corresponding to the DSL QTL are associated with a reduction in interploidy lethality. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRANSPARENT TESTA GLABRA 2 (TTG2); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 5962 Blast hits to 3069 proteins in 194 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 5906; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15645603..15646792 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38434.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.49 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSCDDDSDSR NYVVYKPKAK LVSKATVSAL ANMGNRQQTW RQSEAVSYGK SVSQGTHRAG PNLVQKVPSF TESETSTGDR SSVDGYNWRK YGQKQVKGSE 101: CPRSYYKCTH PKCPVKKKVE RSVEGQVSEI VYQGEHNHSK PSCPLPRRAS SSISSGFQKP PKSIASEGSM GQDPNNNLYS PLWNNQSNDS TQNRTEKMSE 201: GCVITPFEFA VPRSTNSNPG TSDSGCKSSQ CDEGELDDPS RSKRRKNEKQ SSEAGVSQGS VESDSLEDGF RWRKYGQKVV GGNAYPRSYY RCTSANCRAR 301: KHVERASDDP RAFITTYEGK HNHHLLLSPP SSSTLPFNSP QLSKQTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)