AT2G37150.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.897 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34040.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15603748..15607600 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67157.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.12 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||||||
| Length | 599 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVPHVSPLG LVAGLSLMYS DLRIVLWTFL VDWESKANLN SSHLEVILIH RGLMGHRHFL GSSQFFDDEH DQGWNHTHPE HPYSSQATSG TSENRSHVYP 101: AENMLNEGMP VSSHWNSSPG PNAYTDSGHS VERPHYNPGV SGPSHDPSVN STVPTFSAPH ENYVTFASSS SYNSQTWSNA SYVDHQSMES VRGAQKRKRP 201: CPSSIYEMGS SSQYHGDRTP ADTHFPSELH LGKSITHDHD PHYMPWLMNP TYRSNNLSIR GESSSRNVRS RPTLDSETSL GRNNLPRSLS LDSHSTHHHS 301: VDHYGSGQFP GQTSHGNKDW NCARLSPVLR DINGFSPETN NFLPARSVVN SLSVNTSGYH HHELTGNRNP TVSHGVPGTS TLSTSSSRFS HRSTSTYRSS 401: SHGSRSGHVA SSSGDRSHLV TETYPSRHLR PPPHISWRSG DRPGRRRSSY ERFQPPFDEV ALHERFSSEE FMVEDRQPQY YGSRNMLDHH RDMRLDIDNM 501: SYEELLDLGE RIGSVNTGLS DSAISSCLLA TMYYPSYQTE EQRKCAICLE EYKEKEELGE VKGCGHDYHG RCIKKWLSMK NSCPICKSPA LPDASKNSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)