AT2G37025.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRF-like 8 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRF-like 8 (TRFL8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2); Has 426 Blast hits to 414 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 25; Plants - 327; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15550042..15551957 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46550.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||||||
| Length | 410 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGPFGMETTP GFPDTFAGFK SASVDENLGH SMEDKMSDMK HFLMDPHHDN TAVDSFLGLG MENMGLTSKM EEFSHGFDVS FLPDYGGVNT FSTQDVEAGL 101: KFEILDGILD GVDEVEDIYA SHELSSIVNH FPPETEVKKN ELEGDPYGLM NFSSESYSPG ISGSIGLAEW SKETVPYAES QIVSSEKVKD SWDTNESEDD 201: KKPLSTFIGS WIKRKNRKQK LLNTACSRLD SSRERKSCES YDFRPRKGPM KKYIHTSMEK TFSDDQLTLS ESEDDISVTK TSRTKSDRRK NQRIWTLDEV 301: MNLVDGISHF GVGKWTDIKN HFFHYAAHRK PVDIRDKWRN LLKASYNEKH NDGQAEEKRK SVARSIPKDI LHRVRELASL HPYPFSKSPC IVHDSSRSRS 401: TSKNKKKKSG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)