suba logo
AT2G36740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors;DNA binding;DNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWC2; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272), YL1 nuclear (InterPro:IPR008895); Has 4932 Blast hits to 3253 proteins in 360 species: Archae - 2; Bacteria - 230; Metazoa - 1594; Fungi - 576; Plants - 159; Viruses - 97; Other Eukaryotes - 2274 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41119RUeggNOG:KOG2897EMBL:AC006282EMBL:AK227712
EMBL:CP002685EnsemblPlants:AT2G36740EnsemblPlants:AT2G36740.1entrez:818246
GeneID:818246Genevisible:F4IP06GO:GO:0005634GO:GO:0006355
GO:GO:0009908GO:GO:0030154GO:GO:0043486Gramene:AT2G36740.1
hmmpanther:PTHR13275HOGENOM:HOG000084622InParanoid:F4IP06IntAct:F4IP06
InterPro:IPR008895InterPro:IPR013272KEGG:ath:AT2G36740KO:K11664
ncoils:CoilOMA:CERTFVTPANTHER:PTHR13275PaxDb:F4IP06
Pfam:F4IP06Pfam:PF05764Pfam:PF08265PIR:B84784
PRIDE:F4IP06PRO:PR:F4IP06ProteinModelPortal:F4IP06Proteomes:UP000006548
RefSeq:NP_181212.2SMART:SM00993STRING:3702.AT2G36740.1TAIR:AT2G36740
tair10-symbols:ATSWC2tair10-symbols:SWC2UniGene:At.37514UniProt:F4IP06
Coordinates (TAIR10) chr2:-:15407066..15409430
Molecular Weight (calculated) 42150.40 Da
IEP (calculated) 4.86
GRAVY (calculated) -1.09
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)