AT2G36560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AT hook motif DNA-binding family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AT hook motif DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 3707 Blast hits to 1497 proteins in 203 species: Archae - 2; Bacteria - 99; Metazoa - 609; Fungi - 221; Plants - 729; Viruses - 1; Other Eukaryotes - 2046 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15329193..15332447 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61194.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.23 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||
| Length | 574 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNSTPCITP FPVTKTAVAA PATVVEGVND ANSTPISPFP VTKTAEAAPA TVVEGVNDAS RKRERPKTYR DYKGRFITAS GTFTPRSSLR KRRGDMSMRL 101: GGGDFTPHSF TVNKGEDIIK RIMSFTANGS RGISVLSVNG AVANVTILPH GSSRRVMTFK EEYEIVSLTN NTMAISESGG VKNKTGGWRI TIGGAAGGRV 201: HGGALAGSLI AASPVQVVIG SFWPLITNSR QKRKYVSKAM VAPSITPNLV ASSSTRPVQQ PEMVGPSHSQ KRNSESNRTM VVLSATPPNT LASSSTGPVQ 301: QPEMVGPSHS QKRNSESNKT MVVLSATPPN TLASSSTGPV QQPEMVGPSH SQKRNSESNR TTVVFSATPP NTLASSSTGQ VQGPDMIGPS HSQEKKDESN 401: NAMAVFSPTA PSFLASSSTE QVQQPDMIGP YHSRQRNDES NDVILLPTVQ YLLASSFTRQ VQRQPEMTGP SHSQKRNDES QAAVVTPAIP NSLASSFTGQ 501: VQRQAEMTGP SHSQKRNNES QAAVVTPEIP NLLASSFTGP EMIGPSHSEE MNDEFNPSQF LTLGWYSSTP EQDK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)