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AT2G36390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : starch branching enzyme 2.1
Curator
Summary (TAIR10)
Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues.
Computational
Description (TAIR10)
starch branching enzyme 2.1 (SBE2.1); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.2 (TAIR:AT5G03650.1); Has 15972 Blast hits to 15848 proteins in 2360 species: Archae - 125; Bacteria - 12355; Metazoa - 437; Fungi - 446; Plants - 1422; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G36390-MONOMERBioGrid:3556CAZy:CBM48CAZy:GH13
EC:2.4.1.18eggNOG:COG0296eggNOG:KOG0470EMBL:AC006919
EMBL:AJ000497EMBL:AK226896EMBL:AY136411EMBL:CP002685
EMBL:U18817EnsemblPlants:AT2G36390EnsemblPlants:AT2G36390.1entrez:818212
Gene3D:2.60.40.10Gene3D:2.60.40.1180Gene3D:3.20.20.80GeneID:818212
Genevisible:O23647GO:GO:0003844GO:GO:0004553GO:GO:0005978
GO:GO:0005982GO:GO:0009501GO:GO:0009507GO:GO:0009570
GO:GO:0010021GO:GO:0019252GO:GO:0043169GO:GO:0071329
GO:GO:0071332GO:GO:0071333GO:GO:0071482Gramene:AT2G36390.1
gramene_pathway:2.4.1.18gramene_pathway:PWY-622hmmpanther:PTHR10357hmmpanther:PTHR10357:SF141
HOGENOM:HOG000175159InParanoid:O23647InterPro:IPR004193InterPro:IPR006047
InterPro:IPR006048InterPro:IPR006407InterPro:IPR013780InterPro:IPR013781
InterPro:IPR013783InterPro:IPR014756InterPro:IPR015902InterPro:IPR017853
iPTMnet:O23647KEGG:00500+2.4.1.18KEGG:ath:AT2G36390KO:K00700
ncoils:CoilOMA:NGSYDKCPANTHER:PTHR10357PaxDb:O23647
Pfam:O23647Pfam:PF00128Pfam:PF02806Pfam:PF02922
PhylomeDB:O23647PIR:B84780PIR:S65045PIRSF:PIRSF000463
PRIDE:O23647PRO:PR:O23647ProteinModelPortal:O23647Proteomes:UP000006548
RefSeq:NP_181180.1SMART:SM00642SMR:O23647STRING:3702.AT2G36390.1
SUPFAM:SSF51011SUPFAM:SSF51445SUPFAM:SSF81296TAIR:AT2G36390
tair10-symbols:BE3tair10-symbols:SBE2.1UniGene:At.24317UniGene:At.67284
UniPathway:UPA00152unipathway:UPA00164UniProt:O23647
Coordinates (TAIR10) chr2:+:15264283..15269940
Molecular Weight (calculated) 97664.90 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.56
Length 858 amino acids
Sequence (TAIR10)
(BLAST)
001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)