AT2G36370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.487 cytosol 0.306 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin-protein ligases | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ubiquitin-protein ligases; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/Kelch-associated (InterPro:IPR011705), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G62980.1); Has 4192 Blast hits to 3006 proteins in 210 species: Archae - 0; Bacteria - 59; Metazoa - 2442; Fungi - 369; Plants - 1012; Viruses - 17; Other Eukaryotes - 293 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15247894..15252800 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100322.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 898 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEILSYGSV KVRAHRTRLI QESSYFHGLL SGSFSESGLD HISVEWNLES FLNLLMCLYG YDIEITSSSF LPLFESALYF GVEKLLSICK NWLSVLASSN 101: DNALPKVELS DLIQIWSFGL EHAGEFVPDL CVAYLAKNFM LVKSDKYFGN VPYELLMWCV KHPHLTVHSE MDLVDGLLIW LDAGGRLSDL PESSQDNTIN 201: LMEQVRFSLL PLWFIAGRSK SHGFSKFADQ SIELVTKLMK MPSTCLVDSL TDGPPTDVRV RLTEYSEILD LSGCPQLNEA SLLLSILPNS YFANLRWRKS 301: LESFLKNPDD DERHQEQISH RTLPILSFES VKEIDISKCQ RLDYKVVIKC FSKSFPSLRK LRAAYLLNIK VSTLLELLLN FRELTEVDLT VDVSPIIPVQ 401: ASVFYSGQGH CLLSSITRLT LEGRSDICDM ELRSISRVCE SLCYLNIKGC ALLSDACIAS VIQRCKKLCS LIVCYTSFSE NSILALCATI SMTNEHMDIN 501: SVASNLQTLH MSKCEGISET SLLNLITHSQ KMKSLCLRDT KVSDSVLCEF PGSTLEALDI SNTTISWMAL ARVISRNPNL KTLKARGCKN LLQLEVDGRT 601: DNFSPLVSGQ EVFKCLSKGS GLEELEIGWG FSYFSFESLR PAASFLRVIS VGLGASLGED VLKLLPSTCP LLESIVLHFQ EISDSALTSV LTSLKHLQEL 701: ALSYCFGEIS LQSFKFSMPN LRKLRLERVT RWMTNDDLLV LTQSCPNLTE LSLVGCLHLT SDCQPIISAG WPGMISLHLE ECGSITENGV ASLYGCIALE 801: DLFLRHNGSG IQKSFLLDAT LKFPMLRLVS LDMCDAKEGG FDVPEEKEEG RSLSIVKISR CKSDRCSLGR RAAPMHRETL VMLWNGQTLT KTLLKQRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)