AT2G35670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VEFS-Box of polycomb protein | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. | ||||||||||||
| Computational Description (TAIR10) |
FERTILIZATION INDEPENDENT SEED 2 (FIS2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.2); Has 12278 Blast hits to 7688 proteins in 680 species: Archae - 7; Bacteria - 1319; Metazoa - 4326; Fungi - 1979; Plants - 496; Viruses - 125; Other Eukaryotes - 4026 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14992721..14996558 | ||||||||||||
| Molecular Weight (calculated) | 85400.00 Da | ||||||||||||
| IEP (calculated) | 7.15 | ||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||
| Length | 755 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARKSIRGKE VVMVSDDDDD DDDDVDDDKN IIKCVKPLTV YKNLETPTDS DDNDDDDDDD VDVDENIIKY IKPVAVYKKL ETRSKNNPYF LRRSLKYIIQ 101: AKKKKKSNSG GKIRFNYRDV SNKMTLKAEV VENFSCPFCL IPCGGHEGLQ LHLKSSHDAF KFEFYRAEKD HGPEVDVSVK SDTIKFGVLK DDVGNPQLSP 201: LTFCSKNRNQ RRQRDDSNNV KKLNVLLMEL DLDDLPRGTE NDSTHVNDDN VSSPPRAHSS EKISDILTTT QLAIAESSEP KVPHVNDGNV SSPPRAHSSA 301: EKNESTHVND DDDVSSPPRA HSLEKNESTH VNEDNISSPP KAHSSKKNES THMNDEDVSF PPRTRSSKET SDILTTTQPA IVEPSEPKVR RVSRRKQLYA 401: KRYKARETQP AIAESSEPKV LHVNDENVSS PPEAHSLEKA SDILTTTQPA IAESSEPKVP HVNDENVSST PRAHSSKKNK STRKNVDNVP SPPKTRSSKK 501: TSDILTTTQP TIAESSEPKV RHVNDDNVSS TPRAHSSKKN KSTRKNDDNI PSPPKTRSSK KTSNILATTQ PAKAEPSEPK VTRVSRRKEL HAERCEAKRL 601: ERLKGRQFYH SQTMQPITFE QVMSNEDSEN ETDDYALDIS ERLRLERLVG VSKEEKRYMY LWNIFVRKQR VIADGHVPWA CEEFAKLHKE EMKNSSSFDW 701: WWRMFRIKLW NNGLICAKTF HKCTTILLSN SDEAGQFTSG SAANANNQQS MEVDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)