AT2G34850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.898 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 25 (MEE25); FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, pollen tube development, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G30620.2); Has 20484 Blast hits to 20484 proteins in 2781 species: Archae - 515; Bacteria - 13175; Metazoa - 415; Fungi - 214; Plants - 690; Viruses - 18; Other Eukaryotes - 5457 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14704792..14705768 | ||||||||||||
| Molecular Weight (calculated) | 26110.30 Da | ||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||
| Length | 236 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAHGVKTLI YSSTCATYGE PEKMPITEET PQVPINPYGK AKKMAEDIIL DFSKNSIMAV MILRYFNVIG SDPEGRLGEA PRPELSEHGR ISGACFDAAR 101: GIIPGLQIKG TDYKTVDGTC VRDYIDVTDL VDAHVKALEK AKPRKVGIFN VGTGKGSSVK EFVEACKKAT GVDIKVDYLE RRAGDYAEVY SDPRKIKEEL 201: NWTAKHTNLQ ESLKMAWRWQ KLHRSGYGSS SLVSAY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)