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AT2G34820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G30670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J23WeggNOG:ENOG410YNRXEMBL:AC004238EMBL:AF488588
EMBL:AY234412EMBL:CP002685EnsemblPlants:AT2G34820EnsemblPlants:AT2G34820.1
entrez:818047Gene3D:4.10.280.10GeneID:818047Genevisible:Q84RD0
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT2G34820.1hmmpanther:PTHR16223hmmpanther:PTHR16223:SF49
HOGENOM:HOG000090323InParanoid:Q84RD0InterPro:IPR011598KEGG:ath:AT2G34820
OMA:EIFNETHPaxDb:Q84RD0Pfam:PF00010Pfam:Q84RD0
Pfscan:PS50888PhylomeDB:Q84RD0PIR:T00464PRIDE:Q84RD0
PRO:PR:Q84RD0PROSITE:PS50888ProteinModelPortal:Q84RD0Proteomes:UP000006548
RefSeq:NP_181028.2SMART:SM00353SMR:Q84RD0STRING:3702.AT2G34820.1
SUPFAM:SSF47459TAIR:AT2G34820UniGene:At.37756UniProt:Q84RD0
Coordinates (TAIR10) chr2:+:14689632..14690594
Molecular Weight (calculated) 33571.60 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.56
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMDCLSYFF NYDPPVQLQD CFIPEMDMII PETDSFFFQS QPQLEFHQPL FQEEAPSQTH FDPFCDQFLS PQEIFLPNPK NEIFNETHDL DFFLPTPKRQ
101: RLVNSSYNCN TQNHFQSRNP NFFDPFGDTD FVPESCTFQE FRVPDFSLAF KVGRGDQDDS KKPTLSSQSI AARGRRRRIA EKTHELGKLI PGGNKLNTAE
201: MFQAAAKYVK FLQSQVGILQ LMQTTKKGSS NVQMETQYLL ESQAIQEKLS TEEVCLVPCE MVQDLTTEET ICRTPNISRE INKLLSKHLA N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)