AT2G33835.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a zinc finger domain containing protein that is expressed in the shoot/root apex and vasculature, and acts with FRI to repress flowering.FES1 mutants in a Col(FRI+) background will flower early under inductive conditions. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FRIGIDA-ESSENTIAL 1 (FES1); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of vernalization response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, vascular tissue, root tip; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G18640.1); Has 279 Blast hits to 165 proteins in 46 species: Archae - 0; Bacteria - 31; Metazoa - 18; Fungi - 38; Plants - 89; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14312145..14314566 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64378.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 587 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDSDMDIDD DEVEQKVQVH TIVRESELFD KPPIQASNSH NDVKRHSVTT PLDEQSKIIK EQAFAQDNGT LPRFPAPGIP PRSFFTGGGG NEPEQKRAAL 101: PCKFFAKGWC FNGVSCKFLH VKENSNCTSQ QLAENSMAGN GGIRSDLERR ILDSREGVRV SQLSENGVTS LPTREDISFM NPQRVFSSMS FVNPPGSQRV 201: FPFNNEMRFM PSFENIRRES LKQTYGADFT DNRSLVINNA NSFALRSSFV HEHRPSISSY LKTDMGSAGP AWTGSLSSSV PMNDRASTVG DFENGNSLSG 301: SGSLPTLQGV AVSSDKGAEA NTTSTKKKVS SDDWEPSEPF KASFTIPPYI LPSSDALYDP FTDIENLGDR PLNDSLSSKG EHARKSSCQQ KDGDSASGPQ 401: ARDCKNDDKS SSCSQNQHQE TVARSLEAHG VVEGVATSVV DQNDTATPSK EISSATAAEN RVVLKRIKPA GHDSWHRSDG SSYKKTKKSD EIDGEVRSDA 501: GMKVMRLFRT AVVETIKEML KPLWREGRLT KDVHNMIVKK AAEKVVGAAV QFHQVPTDTE SVDQYLGLSG TRIVKLVEGY VEKYGKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)