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AT2G33510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink).
Protein Annotations
EMBL:BT020470EMBL:CP002685EnsemblPlants:AT2G33510EnsemblPlants:AT2G33510.1
entrez:817916ExpressionAtlas:Q5HZ54GeneID:817916Gramene:AT2G33510.1
hmmpanther:PTHR14791hmmpanther:PTHR14791:SF27HOGENOM:HOG000029153InterPro:IPR001202
ncoils:CoilPhylomeDB:Q5HZ54Proteomes:UP000006548RefSeq:NP_180909.2
SMR:Q5HZ54SUPFAM:SSF51045TAIR:AT2G33510UniGene:At.37916
UniProt:Q5HZ54
Coordinates (TAIR10) chr2:+:14194195..14195473
Molecular Weight (calculated) 21568.80 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.92
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAPNMETIT ESLEKSMMNC SLNDRRRRVV GDGFGRSSSN EHMTPISDRT LELNSHLSLP CHWEQCLDLK TGEIYYINWK NGMRVKEDPR KVMNADPDSG
101: DSYGTVCSEE DSSYYDSEES SSESSPSSRE NHKEEEEEEE EEEEEEEDVL VVAGCKACFM YFMVPKLVED CPKCAAQLLH FDRPHSASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)