AT2G33280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.513 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G04570.1); Has 566 Blast hits to 559 proteins in 121 species: Archae - 4; Bacteria - 103; Metazoa - 0; Fungi - 7; Plants - 244; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:14106410..14107720 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44416.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.63 | ||||||||||||||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAKPLYGVL SDVLYIGGAR RVPYISVGVL LQGLAWGSLA IFPGAREVLP SLMAFILLSN LGASITEVSQ DALVAEYGLR YQINGLQSYA LMASAVGGIL 101: GNLLGGYCLL KTPPRILFLA FTALLSLQLI VSLSSKEESV NLPRIGEVTP EISSVLGIVK KQFLDLKGIV QVDEISQPLI WIVSSIALVP LLSGSVFCYQ 201: TQVLNLDPSV IGMSKVIGQL MLLCLTVVYD RYWKKLPMRA LIHIVQLLYA FSLLFDYILV KQINLAFGIS NTAFVLCFSS VAEILAQFKI LPFSVLLANM 301: CPGGCEGSIT SFLASTLCLS SVVSGFTGVG MANMIGITSK NYSNLPAGIL IQSLAALVPL WFIHYVPMLE PGFEREGKRA MSKKSRRNRR VGRVIGQESF 401: AYRRERET |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)