AT2G33160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity, nucleic acid binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G43080.1); Has 4055 Blast hits to 4034 proteins in 453 species: Archae - 8; Bacteria - 853; Metazoa - 14; Fungi - 1250; Plants - 1822; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14053404..14056246 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74976.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.55 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRVLLILC VPSLFFFLAA STKEYPGQPK IFDVRNYGAR ADSQRDNAFA FTKAWNEACQ WSYGRSTVYI PSGIFYLRQV TFSGPCKSSI TFFIRGTLLA 101: PRNPYAINQE EWILFKYVDN LTVTGGGLLD GQGSYSWPLN DCNKNTNCRT LAMNIGFAFV KSSKINGLRS INSKMGHFNL FSVEDFNITG VTITAPGDSP 201: NTDGIKIGKS SHMQIYNVTI GTGDDCIAIL DGTSNLDISD VRCGPGHGIS VGSLGRYKEE KNVQGLTVRN SIINGTTDGL RIKTWAKSVS QISVSNFLYE 301: NIQMINVGNP IVIDQQYCPH GQCDSPGKYA SHVQIKDVKY NNIWGTSTSK EALKMQCSKT FPCQDVELSN INLHYVGRDG LVTALCENVG GSIRGKIVPA 401: NCRINLFLPS NIITDSNSTL EDKMQGIFQL ANTTQTQRFH QLPLWILWRL WNSRNILYFQ RRHVPWETTL QLAQMDLQEW NEAVTPSHIN SHGTTIRSHI 501: PNWRRPTNGW VKCNVDGSFI NGNIPGKGGW IVRDHNGRYE FAGQAIGNCI DNALECEFQA LLMAMQHCWS KGYRRICFEG DNKEMFDLIN GLKMHFGAFN 601: WIRDILWWAS KFEQTQFQWT NRQNNKPADI LARTPLQHQF LFANHFWVPR VISFALHCDY TSSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)