AT2G33010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ubiquitin-associated (UBA) protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ubiquitin-associated (UBA) protein; CONTAINS InterPro DOMAIN/s: UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein-related (TAIR:AT2G33000.1); Has 31 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:14010892..14013246 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 72215.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.23 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||
| Length | 649 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNPMEVDRI SDETGAYREE ALYYLEAYDW NLAPAMEACG VKTLPSVKVK SSPVVSVTEQ STAEEYSATP LTIIPPRVSN QDPRSINYPS LTSNPLPPRK 101: RSHSGRVLNP PQELSHELKQ ERINLFLAVA SDLPSQEVLS YLERFNWDVE RAGAQYYEDR DQQRTSYDRT EIDQSYLQRF QEGYTPMIGV SNLEGFSQNE 201: TSTMDLMQHS APPLPSLHLP SESQFHDSVG YQLGDHSSSF SGLMNVDVDE FGDVYDIPIM SSSSQVQVLI FSFSALYLSS GLLCFLKIVF TKKGTNSMLI 301: DAHRSFVFDD EGTLEKTRIQ GSSSSAQNLE DHPPPNNIDR ICTETGVSRG EAVYYLESFD GDLASAIEAC RSKNLPTLKV RSSPVVSVNE ISAVPEWESP 401: TERPLVMNSC PISNELQIQP EQLPLNKEEI IKQFCEIVGL HPDVAVAYLE RCQWSLQVAI DYFMNEAYFT EDVTSNPPLP LIGLPSQSQF QASGSSFSSL 501: TNIDPTDFTV ANLPMASSQV DQPRYISLDG LSLDVAFFVV EEDLSTETFL DPQAIQGWTS VGHEAAPTTI TLTIYLDDGG SVTPVYIPFR SDQTVRDIRN 601: AIDELTPANN RYYDLRSVGG EDDCRDMNAT VGKICKSGST TLHQVFHNT |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)