AT2G33000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin-associated (UBA)/TS-N domain-containing protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ubiquitin-associated (UBA)/TS-N domain-containing protein-related; CONTAINS InterPro DOMAIN/s: UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has 21 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14006195..14008322 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 56616.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.36 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||
| Length | 508 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKESRSPAQI GDEHLSPTAK ADLIDRICAE LGVCEEEALC YLDGFHWDFD SALEACRNQT SPFPPSLTVE STPVNANSAS LTTPLMIDPL RSWNPPDEQS 101: RNESIARFCY AVAGVSVEEA RAYLERSNWN INLAVDSFLV ERRATPLQKK SNPLRLDSKS RFLDYSKPLR IGRSSSDSME VDSTGEQIPE AIPPLMASSQ 201: VNTQENQEST SVWPPMKTWV DRICHETKVS REEAFYYLEG SKWNFSRAVE ACRSKTLPVV SASQESAEAP PNSPEQPSLL KNEWISSFCE AASTATREEA 301: IYCLKVCNWD VHRAIGFYME DFSEHQTSVA VNMSLKENRK LPLSSIELPS QSQFEASLGY LKEGSTSSLL EVDPTELKRS LEEAGEENAA VAIPRMTSSQ 401: VDGKGIEEDS SMETFPDPVA YQDRIIVGPR AGGTTITLTI LLANTRSVNI PFRSNQTVRD IRDAIDELTP DYEKDYILQS MAEVVYMDPD ITVHEISTGS 501: TTLLQIYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)