AT2G32780.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.980 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ubiquitin-specific protease 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ubiquitin-specific protease 1 (UBP1); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 2 (TAIR:AT1G04860.1); Has 10180 Blast hits to 6642 proteins in 266 species: Archae - 0; Bacteria - 16; Metazoa - 5268; Fungi - 1912; Plants - 1372; Viruses - 7; Other Eukaryotes - 1605 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:13898431..13901870 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 120777.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1083 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MRFAATVSEK QSEQSVEVTE EFAVTMTEKR SCVHFDKYVD LDKLLKIIKS YQQIKCGECN ERVHVKRGSR WGASNRRDWY SSSDQNCARN AIWLCLECGY 0101: YVCGDVGLPT EAQSHVMGHN RLTRHRLVIQ CKNPQLRWCF SCQSLLPFDN EENGEKKDLL LEVVKLIRER SPNTYSASFE TEFSCSGSIY GGIEARDGYA 0201: VRGLVNLGNT CFFNSVMQNL LSLDQLREHF LKEDLSVSGP LVSSLKELFA ESNSEASVFR NEINPRDLFF SVCSQAPQFR GYQQHDSHEL LRCLLDGLSI 0301: EESSLRKKLG VSDSNDSSTY QKPTLIDSVF GGEISSTVSC LECGHFSKVY EPFMDLSLPV PSMKLPPKKQ QILSQAKEVL KNGAVSKDSE VVSAKPASDH 0401: NSTVPLFPSD HKIQSRPETS DNETDLVLLS DVSDTAPSTE AKGVNQILVG STETLMHDND RTGKTVPDKE DVRATQSNEE TSASGISAVI DEAQVCGCPD 0501: LEQSSSSANQ GADEELALMV ADSQVLYMPY KDHLFYDDYM VAEASSSFVS GDHEPKKDYF DFSSFLDEPE IREGPVFRPL SKSEVYEAGF KADCSDDKTV 0601: SAGKGEASSS FISSDHEQNI DYVDFSSFFD EPEISERPFF RPLSKSEVSE AGFKADCSDD KTVSAGKGEA SSSFVSSDHE QNIDYVDFSS FFDEPEISER 0701: PFFRPLSKSE VSEAGFMAVS GNDKTVRAGK GETFSSFMSG DNERNIDYVE FTNRIFDDRG TSERPVFGPP SKAKVSEAGF VAVSSDSDPA VLDESDSPVS 0801: VDRCLAQFTK HEILSEDNAW HCENCSKNLK LQRLREKRRT KEGLSNRWVN ENGASSAFDE CRDSSLNQSC IDLENGYKAA PPITKLPNCK EEESAIDDGF 0901: VGEENTKQAP ITSVTETPLL GGETISSQPA SDNECENWED LAVDSEEVIV KRDARKKVLI NKAPPVLTIH LKRFSQDARG RVSKLSGHVD FQEFIDLSKY 1001: MDTRCSEEDE PVYRLAGLVE HLGAMSRGHY VSYIRGGHKE RRDSDTKEPN SSIWYHASDS QVRPASLEEV LRSEAYILFY ERI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)