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AT2G32580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1068)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT1G05070.1); Has 118 Blast hits to 118 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSREeggNOG:KOG1823EMBL:AC004681EMBL:AK227659
EMBL:AY090949EMBL:AY122927EMBL:CP002685EnsemblPlants:AT2G32580
EnsemblPlants:AT2G32580.1entrez:817818ExpressionAtlas:O80895GeneID:817818
GO:GO:0005794Gramene:AT2G32580.1hmmpanther:PTHR32254HOGENOM:HOG000240455
IntAct:O80895InterPro:IPR010471ncoils:CoilOMA:SCSACVC
Pfam:PF06364PhylomeDB:O80895PIR:T02557Proteomes:UP000006548
RefSeq:NP_565746.1STRING:3702.AT2G32580.1SwissPalm:O80895TAIR:AT2G32580
TMHMM:TMhelixUniGene:At.38051UniProt:O80895
Coordinates (TAIR10) chr2:+:13827849..13829135
Molecular Weight (calculated) 19967.90 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.47
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)