AT2G32390.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.944 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamate receptor 3.5 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glutamate receptor 3.5 (GLR3.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.4 (TAIR:AT1G05200.2). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13748468..13751908 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99955.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||
| Length | 898 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRDVSMGFM LLCISALWVL PIQGAGRESF SRNSSSSSLP SSVNVGALFT YDSFIGRAAK LAFVAAIEDI NADQSILRGT KLNIVFQDTN CSGFVGTMGA 101: LQLMENKVVA AIGPQSSGIG HIISHVANEL HVPFLSFAAT DPTLSSLQYP YFLRTTQNDY FQMNAITDFV SYFRWREVVA IFVDDEYGRN GISVLGDALA 201: KKRAKISYKA AFPPGADNSS ISDLLASVNL MESRIFVVHV NPDSGLNIFS VAKSLGMMGS GYVWITTDWL LTALDSMEPL DPRALDLLQG VVAFRHYTPE 301: SDNKRQFKGR WKNLRFKESL KSDDGFNSYA LYAYDSVWLV ARALDVFFSQ GNTVTFSNDP SLRNTNDSGI KLSKLHIFNE GERFLQVILE MNYTGLTGQI 401: EFNSEKNRIN PAYDILNIKS TGPLRVGYWS NHTGFSVAPP ETLYSKPSNT SAKDQRLNEI IWPGEVIKPP RGWVFPENGK PLKIGVPNRV SYKNYASKDK 501: NPLGVKGFCI DIFEAAIQLL PYPVPRTYIL YGDGKKNPSY DNLISEVAAN IFDVAVGDVT IITNRTKFVD FTQPFIESGL VVPSSGFLNI DLTKNSADLL 601: GVKSLQSSGL ASQQCSSLTV ARCFILLPLL IFRGEYGEHV GKLTSRIEGM DTLIASNEPI GVQDGTFAWK FLVNELNIAP SRIIPLKDEE EYLSALQRGP 701: RGGGVAAIVD ELPYIKALLS NSNCKFRTVG QEFTRTGWGF AFQRDSPLAV DMSTAILQLA EEGKLEKIRK KWLTYDHECT MQISDTENYQ ISVQSFWGLF 801: LICGVVWFIA LTLFCWKVFW QYQRLRPEES DEVQARSEEA GSSRGKSLRA VSFKDLIKVV DKREAEIKEM LKEKSSKKLK DGQSSAENSQ SKDHETPQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)