AT2G31210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G06170.2); Has 1830 Blast hits to 1818 proteins in 133 species: Archae - 2; Bacteria - 0; Metazoa - 18; Fungi - 11; Plants - 1605; Viruses - 5; Other Eukaryotes - 189 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:13296655..13298139 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48514.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.83 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 428 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYEESSCFDP NSMVDNNGGF CAAETTFTVS HQFQPPLGST TNSFDDDLKL PTMDEFSVFP SVISLPNSET QNQNISNNNH LINQMIQESN WGVSEDNSNF 101: FMNTSHPNTT TTPIPDLLSL LHLPRCSMSL PSSDIMAGSC FTYDPLFHLN LPPQPPLIPS NDYSGYLLGI DTNTTTQRDE SNVGDENNNA QFDSGIIEFS 201: KEIRRKGRGK RKNKPFTTER ERRCHLNERY EALKLLIPSP SKGDRASILQ DGIDYINELR RRVSELKYLV ERKRCGGRHK NNEVDDNNNN KNLDDHGNED 301: DDDDDENMEK KPESDVIDQC SSNNSLRCSW LQRKSKVTEV DVRIVDDEVT IKVVQKKKIN CLLLVSKVLD QLQLDLHHVA GGQIGEHYSF LFNTKIYEGS 401: TIYASAIANR VIEVVDKHYM ASLPNSNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)