AT2G31030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : OSBP(oxysterol binding protein)-related protein 1B | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
OSBP(oxysterol binding protein)-related protein 1B (ORP1B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2291 Blast hits to 2240 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 602; Plants - 285; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:13206004..13207815 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56559.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||
| Length | 489 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEARVISCTT FGDNKVVKIA VLNHQAITKY KAGENETTVV VSDDTCPEKD VKEIKKFCEK LGYVYEGRLS EEYTQTNTGP DDDWITNGFE SDDDVDPSIK 101: TIGFNYPHVN RRNKLPDPVE KEKSVSLWSM IKDNIGKDLT KVCLPVYFNE PLSSLQKCFE DLEYSYLLDQ ASEWGKRGNN LMRILNVAAF AVSGYASTKG 201: RICKPFNPML GETYEADYPD KGLRFFSEKV SHHPMIVACH CDGTGWKFWG DSNLKSKFWG RSIQLDPIGL LTLQFDDGEI VQWSKVTTSI YNLILGKLYC 301: DHYGTMLIEG NGEYSCKLKF KKQSMMDRNP HQVQGIVEDK NGKTVAKLFG KWDESMYYVM VNQGKESESH LLWKRNKPLE NPTKYNLTRF GITLNELTPD 401: LKEMLPPTDS RLRPDQRYLE KGEFEMGNRE KLRLEQRQRQ AREKQERGWK PTWFSKEKGS ETYRYIGGYW EARDSGRWDD CPDIFGQVH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)