AT2G30840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.969 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G30830.1); Has 8436 Blast hits to 8400 proteins in 1007 species: Archae - 0; Bacteria - 1167; Metazoa - 116; Fungi - 920; Plants - 4884; Viruses - 0; Other Eukaryotes - 1349 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13135581..13136833 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40881.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.75 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||
| Length | 362 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEATYDRASE VKAFDELKIG VKGLLDAGVT QIPRIFHHPH LNLTDSNLLL SSTTMVIPTI DLKGGVFDEY TVTRESVIAM IRDAVERFGF FQVINHGISN 101: DVMEKMKDGI RGFHEQDSDV RKKFYTRDVT KTVKYNSNFD LYSSPSANWR DTLSCFMAPD VPETEDLPDI CGEIMLEYAK RVMKLGELIF ELLSEALGLN 201: PNHLKEMDCT KGLLMLSHYY PPCPEPGLTF GTSPHSDRSF LTILLQDHIG GLQVRQNGYW VDVPPVPGAL LVNLGDLLQL MTNDQFVSVE HRVLANKGEK 301: PRISVASFFV HPLPSLRVYG PIKELLSEQN LPKYRDTTVT EYTSHYMARG LYGNSVLLDF KI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)