AT2G30630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.329 plasma membrane 0.278 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.1); Has 204 Blast hits to 203 proteins in 51 species: Archae - 0; Bacteria - 47; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13046883..13049106 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60736.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 531 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLDDPQSKS RSMCVPEFNS NNNTTTFAQI LVISSIGLLL ALALHFRLRK LRHSKNIPRL RSSQKHKGHE KLERFSHYVV RQMGFKDRRE CPHLCKLANE 101: YIRKSGSCEE DIYSFFSEEP GADSLFIKLV EEFERCILSY FAYHWSHADL MISQILSADV EPKKKLKHIV MAATREQRFE RVTKNLKVAR VFNTLVEEMK 201: AMGIASVDDS ECTEVMAPVA HKDRSPVLLL MGGGMGAGKS TVLKDILKEP FWAGADAVVI EADAFKESDV IYRALSARGH VDMIKTAEFV HQSSTDAASS 301: LLVTALNEGR DVIMDGTLSW VPFVVQTITM ARNVHRHRYR MGAGYKVGEN GDVIENYWER IGERQQLQED GRERKPYRIE LVGVVCDAYL AVIRGIRRAI 401: MCRRAVRVRS QLRSHKRFAN AFLTYCNLVD NARLYCTNAL EGSPKLIGWK EKEKTLLVDP EEIDCLKNVG RLNENADSIY ELYRNPNPAC EAGSIWKDIV 501: LSPSRFNIQQ ELKYSIQKVE RFKQYLQETP R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)