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AT2G30320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pseudouridine synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 2235 Blast hits to 2027 proteins in 681 species: Archae - 89; Bacteria - 873; Metazoa - 390; Fungi - 255; Plants - 163; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink).
Protein Annotations
BioGrid:2931EC:5.4.99.-eggNOG:COG0101eggNOG:KOG2553
EMBL:AC002338EMBL:CP002685EnsemblPlants:AT2G30320EnsemblPlants:AT2G30320.1
entrez:817582Gene3D:3.30.70.580Gene3D:3.30.70.660GeneID:817582
Genevisible:O22928GO:GO:0001522GO:GO:0003723GO:GO:0008033
GO:GO:0009982Gramene:AT2G30320.1hmmpanther:PTHR11142hmmpanther:PTHR11142:SF9
HOGENOM:HOG000070648InParanoid:O22928InterPro:IPR001406InterPro:IPR020094
InterPro:IPR020095InterPro:IPR020097InterPro:IPR020103iPTMnet:O22928
KEGG:ath:AT2G30320KO:K06173MINT:MINT-8059858OMA:IGWARSS
PANTHER:PTHR11142PaxDb:O22928Pfam:O22928Pfam:PF01416
PhylomeDB:O22928PIR:A84707PRIDE:O22928PRO:PR:O22928
ProteinModelPortal:O22928Proteomes:UP000006548RefSeq:NP_180591.1SMR:O22928
STRING:3702.AT2G30320.1SUPFAM:SSF55120TAIR:AT2G30320UniGene:At.38371
UniProt:O22928
Coordinates (TAIR10) chr2:-:12925728..12927896
Molecular Weight (calculated) 58974.80 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.64
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVSFLRIPI PSRVFWYPTR LIRVTPALLR FSSSAAFQPS STSLSPPSSD NFLADKWESY RKKKVVIRIG YVGTDYRGLQ IQRDDPSIKT IEGELEVAIY
101: KAGGIRDSNY GDLHKIGWAR SSRTDKGVHS LATSISLKME IPETAWKDDP QGTVLAKCIS KHLPENIRVF SVLPSNRRFD PRRECTLRKY SYLLPVDVLG
201: IKNSFTSDEI DYHITDFNEI LKEFEGEYPF HNYTQRSRYR RKSEQKIKQR NGRPPREPKS IKASESEFRE ENHIEIGEEE EEKEVDGESD EHVVTPDSDN
301: SQVYSRAKWL YEPDETDKIS GAHFRKVFRC RSGKLENSLG FGFVEISIWG ESFMLHQIRK MIGTAVAVKR ELLPRDIIRL SLNKFTRIVL PLAPSEVLIL
401: RGNSFEVRRL PERPGMEATG ESEEVEKEIE EFYRAVMVPQ VSIFLDSEKS PWKEWVDHLD RNDGLIDEEL EDVRKGWEEW KAAKPWMNLK KTEDDEEALS
501: SVSVPIHQAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)