AT2G30100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G04810.1); Has 68862 Blast hits to 30982 proteins in 1167 species: Archae - 27; Bacteria - 7834; Metazoa - 26033; Fungi - 2446; Plants - 28670; Viruses - 2; Other Eukaryotes - 3850 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12847828..12849520 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57558.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||
| Length | 503 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAYAHVFASL TISTISLRRF LPRLHRNHSV KPNSRIICNL KLNYSAGKFR EMGLSRSVEL DQFITSEEEE GEAEEIGEGF FEAIEELERM TREPSDILEE 101: MNHRLSSREL QLMLVYFAQE GRDSWCTLEV FEWLKKENRV DEEIMELMVS IMCGWVKKLI EDECNAHQVF DLLIEMDCVG LKPGFSMMDK VIALYCEMGK 201: KESAVLFVKE VLRRRDGFGY SVVGGGGSEG RKGGPVGYLA WKFMVDGDYR KAVDMVMELR LSGLKPEAYS YLIAMTAIVK ELNSLGKTLR ELKRFARAGF 301: VAEIDDHDRV LIEKYQSETL SRGLQLATWA VEEGQENDSI IGVVHERLLA MYICAGRGPE AEKQLWKMKL AGREPEADLH DIVMAICASQ KEVNAVSRLL 401: TRVEFMGSQR KKKTLSWLLR GYVKGGHFEE AAETLVSMID SGLHPEYIDR VAVMQGMTRK IQRPRDVEAY MSLCKRLFDA GLVGPCLVYM YIDKYKLWIV 501: KMM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)