AT2G29940.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : pleiotropic drug resistance 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pleiotropic drug resistance 3 (PDR3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 12 (TAIR:AT1G15520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:12760139..12766455 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 159881.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1426 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAASNGSEY FEFDVETGRE SFARPSNAET VEQDEEDLRW AAIGRLPSQR QGTHNAILRR SQTQTQTSGY ADGNVVQTID VKKLDRADRE MLVRQALATS 0101: DQDNFKLLSA IKERLDRVGM EVPKIEVRFE NLNIEADVQA GTRALPTLVN VSRDFFERCL SSLRIIKPRK HKLNILKDIS GIIKPGRMTL LLGPPGSGKS 0201: TLLLALAGKL DKSLKKTGNI TYNGENLNKF HVKRTSAYIS QTDNHIAELT VRETLDFAAR CQGASEGFAG YMKDLTRLEK ERGIRPSSEI DAFMKAASVK 0301: GEKHSVSTDY VLKVLGLDVC SDTMVGNDMM RGVSGGQRKR VTTGEMTVGP RKTLFMDEIS TGLDSSTTFQ IVKCIRNFVH LMDATVLMAL LQPAPETFDL 0401: FDDLILLSEG YMVYQGPRED VIAFFESLGF RLPPRKGVAD FLQEVTSKKD QAQYWADPSK PYQFIPVSDI AAAFRNSKYG HAADSKLAAP FDKKSADPSA 0501: LCRTKFAISG WENLKVCFVR ELLLIKRHKF LYTFRTCQVG FVGLVTATVF LKTRLHPTSE QFGNEYLSCL FFGLVHMMFN GFSELPLMIS RLPVFYKQRD 0601: NSFHPAWSWS IASWLLRVPY SVLEAVVWSG VVYFTVGLAP SAGRFFRYML LLFSVHQMAL GLFRMMASLA RDMVIANTFG SAAILIVFLL GGFVIPKADI 0701: KPWWVWGFWV SPLSYGQRAI AVNEFTATRW MTPSAISDTT IGLNLLKLRS FPTNDYWYWI GIAVLIGYAI LFNNVVTLAL AYLNPLRKAR AVVLDDPNEE 0801: TALVADANQV ISEKKGMILP FKPLTMTFHN VNYYVDMPKE MRSQGVPETR LQLLSNVSGV FSPGVLTALV GSSGAGKTTL MDVLAGRKTG GYTEGDIRIS 0901: GHPKEQQTFA RISGYVEQND IHSPQVTVEE SLWFSASLRL PKEITKEQKK EFVEQVMRLV ELDTLRYALV GLPGTTGLST EQRKRLTIAV ELVANPSIIF 1001: MDEPTSGLDA RAAAIVMRTV RNTVDTGRTV VCTIHQPSID IFEAFDELLL MKRGGQVIYG GKLGTHSQVL VDYFQGINGV PPISSGYNPA TWMLEVTTPA 1101: LEEKYNMEFA DLYKKSDQFR EVEANIKQLS VPPEGSEPIS FTSRYSQNQL SQFLLCLWKQ NLVYWRSPEY NLVRLVFTTI AAFILGTVFW DIGSKRTSSQ 1201: DLITVMGALY SACLFLGVSN ASSVQPIVSI ERTVFYREKA AGMYAPIPYA AAQGLVEIPY ILTQTILYGV ITYFTIGFER TFSKFVLYLV FMFLTFTYFT 1301: FYGMMAVGLT PNQHLAAVIS SAFYSLWNLL SGFLVQKPLI PVWWIWFYYI CPVAWTLQGV ILSQLGDVES MINEPLFHGT VKEFIEYYFG YKPNMIGVSA 1401: AVLVGFCALF FSAFALSVKY LNFQRR |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)