AT2G29390.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.963 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sterol 4-alpha-methyl-oxidase 2-2 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
sterol 4-alpha-methyl-oxidase 2-2; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-1 (TAIR:AT1G07420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12610758..12612149 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 29478.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.98 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||
| Length | 253 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMQYLVTHFS DFQLACIGSF ILHESVFFLS GLPYIFLERT GFLSNYKIQT KSNTPEAQGK CIARLLLYHC CVNLPLMMAS YPVFRFMGME SSFPLPSWKV 101: VSAQILFYFI IEDFVFYWGH RILHTKWLYK NVHSVHHEYA TPFGLTSEYA HPAEILFLGF ATIVGPALTG PHLITLWLWM MLRVIETVEA HCGYHFPWSP 201: SNFLPLYGGA DFHDYHHRLL YTKSGNYSST FVYMDWIFGT DKGYRKLKAL KET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)