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AT2G29200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pumilio 1
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational
Description (TAIR10)
pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5099eggNOG:KOG1488EMBL:AC004561EMBL:CP002685
EnsemblPlants:AT2G29200EnsemblPlants:AT2G29200.1entrez:817469Gene3D:1.25.10.10
GeneID:817469Genevisible:Q9ZW07GO:GO:0003729GO:GO:0005737
GO:GO:0006417Gramene:AT2G29200.1hmmpanther:PTHR12537hmmpanther:PTHR12537:SF78
HOGENOM:HOG000238460InParanoid:Q9ZW07InterPro:IPR001313InterPro:IPR011989
InterPro:IPR012940InterPro:IPR016024InterPro:IPR033133iPTMnet:Q9ZW07
KEGG:ath:AT2G29200KO:K17943ncoils:CoilOMA:DQAHKAT
PaxDb:Q9ZW07Pfam:PF00806Pfam:PF07990Pfam:Q9ZW07
Pfscan:PS50302Pfscan:PS50303PhylomeDB:Q9ZW07PIR:F84693
PRIDE:Q9ZW07PRO:PR:Q9ZW07PROSITE:PS50302PROSITE:PS50303
ProteinModelPortal:Q9ZW07Proteomes:UP000006548RefSeq:NP_180483.1SMART:SM00025
SMR:Q9ZW07STRING:3702.AT2G29200.1SUPFAM:SSF48371TAIR:AT2G29200
tair10-symbols:APUM1tair10-symbols:PUM1UniGene:At.38509UniProt:Q9ZW07
Coordinates (TAIR10) chr2:-:12549483..12553185
Molecular Weight (calculated) 106570.00 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.53
Length 968 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPELGRRPM HRGNEDSSFG DDYEKEIGVL LGEQQRRQVE ADELERELNL FRSGSAPPTV DGSVSAAGGL FSGGGGAPFL EFGGVNKGNG FGGDDEEFRK
101: DPAYLSYYYA NMKLNPRLPP PLMSREDLRV AQRLKGSNNV LGGVGDRRKV NDNRSLFSMP PGFEGEKTGA SASEWDANGL IGLPGLGLGG KQKSFADIFQ
201: ADMGHGHPVA QQPSRPASRN TFDENVDSNN NLSPSASQGI GAPSPYSYAA VLGSSLSRNG TPDPQAIARV PSPCLTPIGS GRMSSNDKRN TSNQSPFNGV
301: TSGLNESSDL VNALSGLNLS CSVGLDDRSQ AEQDVEKVRN YMFGLQGGHN EVNQHEFPNK SDQAHKATGS LRNSQLRGPH GSAYNGGVGL ANPYQQLDSP
401: NYCLNNYALN PAVASMMANQ LGNNNFAPMY DNVSALGFSG MDSRHHGRGF VSSGQNLSES RNLGRFSNRM MGGGAGLQSH MVDPMYNQYA DSLDLLNDPS
501: MDRNFMGGSS YMDMLELQRA YLGAQKSQYG VPYKSGSPNS HSYYGSPTFG SNMSYPGSPL AHHGMPNSLM SPYSPMRRDE VNMRFPSATR NYSGGLMGSW
601: HMDASFDEGF GSSMLEEFKS NKTRGFELSE IAGHVVEFSS DQYGSRFIQQ KLETATTDEK NMVYEEIMPQ ALVLMTDVFG NYVIQKFFEH GLPPQRRELA
701: EKLFDHVLPL SLQMYGCRVI QKAIEVVDLD QKIKMVKELD GHVMRCVRDQ NGNHVVQKCI ECVPEENIEF IISTFFGHVV TLSTHPYGCR VIQRVLEHCH
801: DPDTQSKVME EILSTVSMLA QDQYGNYVVQ HVLEHGKPDE RTVIIKELAG KIVQMSQQKF ASNVVEKCLT FGGPEERELL VNEMLGTTDE NEPLQAMMKD
901: QFANYVVQKV LETCDDQQRE LILTRIKVHL TALKKYTYGK HVVARIEKLV AAGERRMALQ SLTQPQMA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)