AT2G29200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12549483..12553185 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106570.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 968 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPELGRRPM HRGNEDSSFG DDYEKEIGVL LGEQQRRQVE ADELERELNL FRSGSAPPTV DGSVSAAGGL FSGGGGAPFL EFGGVNKGNG FGGDDEEFRK 101: DPAYLSYYYA NMKLNPRLPP PLMSREDLRV AQRLKGSNNV LGGVGDRRKV NDNRSLFSMP PGFEGEKTGA SASEWDANGL IGLPGLGLGG KQKSFADIFQ 201: ADMGHGHPVA QQPSRPASRN TFDENVDSNN NLSPSASQGI GAPSPYSYAA VLGSSLSRNG TPDPQAIARV PSPCLTPIGS GRMSSNDKRN TSNQSPFNGV 301: TSGLNESSDL VNALSGLNLS CSVGLDDRSQ AEQDVEKVRN YMFGLQGGHN EVNQHEFPNK SDQAHKATGS LRNSQLRGPH GSAYNGGVGL ANPYQQLDSP 401: NYCLNNYALN PAVASMMANQ LGNNNFAPMY DNVSALGFSG MDSRHHGRGF VSSGQNLSES RNLGRFSNRM MGGGAGLQSH MVDPMYNQYA DSLDLLNDPS 501: MDRNFMGGSS YMDMLELQRA YLGAQKSQYG VPYKSGSPNS HSYYGSPTFG SNMSYPGSPL AHHGMPNSLM SPYSPMRRDE VNMRFPSATR NYSGGLMGSW 601: HMDASFDEGF GSSMLEEFKS NKTRGFELSE IAGHVVEFSS DQYGSRFIQQ KLETATTDEK NMVYEEIMPQ ALVLMTDVFG NYVIQKFFEH GLPPQRRELA 701: EKLFDHVLPL SLQMYGCRVI QKAIEVVDLD QKIKMVKELD GHVMRCVRDQ NGNHVVQKCI ECVPEENIEF IISTFFGHVV TLSTHPYGCR VIQRVLEHCH 801: DPDTQSKVME EILSTVSMLA QDQYGNYVVQ HVLEHGKPDE RTVIIKELAG KIVQMSQQKF ASNVVEKCLT FGGPEERELL VNEMLGTTDE NEPLQAMMKD 901: QFANYVVQKV LETCDDQQRE LILTRIKVHL TALKKYTYGK HVVARIEKLV AAGERRMALQ SLTQPQMA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)