AT2G29060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.571 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GRAS family transcription factor | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 14 (TAIR:AT1G07530.1); Has 4860 Blast hits to 2426 proteins in 308 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 0; Plants - 4833; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12481991..12484075 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78105.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.89 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 694 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK 101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ 201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK 301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS 401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA 501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV 601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)