AT2G29040.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G20370.1); Has 4124 Blast hits to 3335 proteins in 318 species: Archae - 0; Bacteria - 277; Metazoa - 1010; Fungi - 350; Plants - 587; Viruses - 35; Other Eukaryotes - 1865 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr2:-:12472425..12474962 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 83973.60 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.75 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||
Length | 720 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAMEKSSSKY RTQFWYVAMA SFLLWLVLLY LFSSSAKTVH NHERLFRQEN IIDLPVENVP QNHEPDEAPV VNVVSEDISV DNSSLPVSVD SPPDDQMSED 101: KKVVTDLVEE LEKERVENEK KRVDSVVIGR SSKARRGHRE PRKARSSGRL EAEKKRVRRN DADESNAENS DENHQALDKE PNFFEAKKDV EPKKALVDDN 201: DDDLETKRGK ELPNDSSSNV VEDDNDDDLE TKKGKDNISK SEPKTQRNFV LNKNNTSKAK NRVISKRNQP SRVGKVMLRP RETRSNDPCK GKYVYMHEVP 301: ALFNEELLKN CWTLSRWTDM CELTSNFGLG PRLPNMEGVS GWYATNQFTL EVIFHNRMKQ YKCLTKDSSL ASAVYVPYYP GLDLMRFLWG PFPFMRDAAA 401: LDLMKWLRES QEWKRMDGRD HFMVAGRTTW DFMRTPENES DWGNRLMILP EVRNMTMLLI ESSPWNYHGF AVPYPTYFHP STYAEIIQWQ MRMRRINRRY 501: LFSFVGAPRP NLGDSIRTEI MDQCKASKRK CKLLECISGS QKCYKPDQIM KFFLSSTFCL QPPGDSYTRR STFDSILAGC IPVFFHPGSA YAQYIWHLPK 601: DIAKYSVFIP EKNVKEGKVS IENVLSRIPR TKVFAMREQV IRLIPRLMYF HPSSKSEDTG RFEDAFDVAV EGVLERVEGL RKRIEEGKEE IFDFPEQYSW 701: KYNVFGNVER HEWDPYFDRP |
||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)