AT2G28670.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Disease resistance-responsive (dirigent-like protein) family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT1G07730.2); Has 149387 Blast hits to 52063 proteins in 2552 species: Archae - 249; Bacteria - 55746; Metazoa - 39096; Fungi - 9081; Plants - 13630; Viruses - 2093; Other Eukaryotes - 29492 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:12300380..12301723 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 41509.30 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.44 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.20 | ||||||||||||||||||||||||||||||||||||||||
Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGQKILSLL VIALVVTFAA AARLLDEENA FSATTTTLGS GSGSTGIGFG AGTGSSGSGS TGFGFGAGSG SSGSGSTGSG LGAGTGSIPS SGSGPGLLPT 101: ASSVPGSLAG GGSGSLPTTG SATGAGAGTG SALGGGPGAG SALGGGAGAG PALGGGAGAG PALGGGAGAG SALGGGGAGA GPALGGGGAG AGPALGGGVA 201: GSGSALGGGA SAGPDNTLVF FMHDILGGSN PTARAVTGVV ANPALSGQLP FAKPNGANLP VSNGVPSNNN NNGIVNNNNV PFLVGLGGTT ANILQNNNNG 301: NNILNGFPVA SGGQLPSGSA LQMLMFGTMT VIDDELTEGH ELGSGLLGKA QGYYVASAID GTSQTMAFTA MFESGGYEDS ISFFGVLRTA VSESHIGVMG 401: GTGKYVNARG FAILKTFTGS SGTQQNQPHQ FTDGLETVVE CTVYLSY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)