AT2G28640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exocyst subunit exo70 family protein H5 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst subunit exo70 family protein H5 (EXO70H5); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140), HEAT, type 2 (InterPro:IPR021133); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H6 (TAIR:AT1G07725.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12284625..12286645 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68757.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 605 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMLLFKPSLT LGRRIKPRPC QSFSESLLMD SIEAAETLTR KWISPDLSSS SSCSLSSIFS TDNRVEGRRF VEVINSLQYA IQGVVLVNPE SPKLTRAHNL 101: VTIAMKQLEK EFYRILKSNR RNLDPESVSV RSSPSFNARN KVSIYSQVPK SEEADVMTDL KMIADCMISS GYENECIKIY KKIRGSIMVK ALSNLGFENL 201: SFGKIQKLDW DSMEKNIKKW LEATKVLITN LFEGERILSD HVFSPSVSVA ESCFTEITLD SALTLFIFPV SVARCKKTVE KIFLTLDIYQ TISQLMPQIE 301: EIFSYDSTTA VRLQAADSLN NLGEEINSMV AEFEASITKE SSKTPIRGGS VHQLTRYVMN FIVFLADYHE CLAGVLTEST LPLPEDYFGN NDEDNNEGET 401: GSSSTVTTRI AWLILVLLCK IDTKSRMYND MALSYLFLAN NLHYVISKVR TSNMRVVLGD EWVTNHEGKV TQYLEKYEKI AWGEVITSLF DSNEEMLEEH 501: VAKERLMRFN EGFEEAFQKQ SEWVVPDSKL RDDLKDSVTE KLTTVTTTFY EKYHVENWEE VKFAPEDLDN YLSDLFLGTG RSCIIVPSLK QSDSGRSLKD 601: SESGR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)