AT2G28390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SAND family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SAND family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar fusion protein MON1 (InterPro:IPR004353); Has 753 Blast hits to 594 proteins in 226 species: Archae - 6; Bacteria - 38; Metazoa - 289; Fungi - 213; Plants - 47; Viruses - 3; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12139836..12143375 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66927.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||
| Length | 607 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSDSRSSP SSSDTEFADP NPSSDPETNS ERVQSQLESM NLSQPSEVSD GSHTEFSGGG DDNDDEVASA NGNEGGVSNG GLLREGVAGT SGGEVLLRAE 101: NPVEMEAGEE PPSPTSSGYD GERGSSGGAT STYKADDGSE DEIREANVDG DTASQHEAAW LPGKRHVDED DASTSWRKRK KHFFILSNSG KPIYSRYGDE 201: HKLAGFSATL QAIISFVENG GDRVNLVKAG NHQVVFLVKG PIYLVCISCT DETYEYLRGQ LDLLYGQMIL ILTKSIDRCF EKNAKFDMTP LLGGTDAVFS 301: SLVHSFSWNP ATFLHAYTCL PLPYALRQAT GTILQEVCAS GVLFSLLMCR HKVVSLAGAQ KASLHPDDLL LLSNFVMSSE SFRTSESFSP ICLPRYNAQA 401: FLHAYVHFFD DDTYVILLTT RSDAFHHLKD CRVRLEAVLL KSNILSVVQR SIAEGGMRVE DVPIDRRRRS STTNQEQDSP GPDISVGTGG PFGLWHFMYR 501: SIYLDQYISS EFSPPVTSHR QQKSLYRAYQ KLYASMHVKG LGPHKTQYRR DENYTLLCWV TPDFELYAAF DPLADKAMAI KICNQVCQRV KDVENEVFLQ 601: GASPFSW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)