AT2G28170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.857 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cation/hydrogen exchanger family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATCHX7; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1); Has 762 Blast hits to 743 proteins in 145 species: Archae - 8; Bacteria - 146; Metazoa - 0; Fungi - 90; Plants - 510; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:12006371..12009956 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90994.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.59 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 801 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPFNASWWT NMAWHGYSLS EDGTKFCEML PTKINSFGLS EKILHKSVGL YFWEYPLPNL ELIILSVFFF WQFFEILFKM SNIPIPKMPS MMLGCVVINL 101: FSYTRPGSLL HRMFFPDDGR PKVAETGGAF GFVMYWFLKG VSIDVGMLRK TEPRAALIGF NTLVIPYISG YILMRTRKHF GKLAMTELQY QEIILLQSLS 201: SFAGVNGLLT DLKINHSEFG RMVQSCAAVT DLVIFIMVSG TVLLKGQKGL PHGIVIVLVI GFLVYIVWPV MLWIIKQTPE GRLVKDVYIY LVMATAYFVY 301: MFWLNFFQFS TYGWFIIGLA TPAGPPLGSA LIQRFECFNV GVLLPLFGSL SMEQLDISWL MREILNLKHM EGFAYEAISV ILIVTVVKFV VTAITAFAVR 401: IPYRDSIVLA MVLSNRSIFE LGYLGYIVEL KMFDNKSFTI AALSVLVSSL LTPIAIEFMY EPQHIFSSYR DRNMLTLKHD SKLKTLVCIH KPDHITSMVN 501: FVELFNPTQE SKLECNVLHL VELIGQAIPT FISHKMQKPK VGTRSCSRNV ITAFLSLRRH LTKEAISIDI FTSASLVEHM HEDLCWLALD KNVALVVLPF 601: HRSWSVDRST IVSDDKAMQN LNHKVLKRAS CSVGIFVYRK PLWESQMHGS CYKVCAIVVG GKDDKEALAF TNRMRRNKQT SVTILHLIPQ LTTEESEDSV 701: QKLDYDDIKE IMKTEDSNEN DSWICIEKSV KEGAETSVIL RSIAYDYDLF IVGRSSGMNS AVTKGLNEWT EFEELGALGD VIASKEFPSR ASVLVLQQQQ 801: Y |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)