AT2G27750.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Surfeit locus protein 6 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Surfeit locus protein 6; CONTAINS InterPro DOMAIN/s: Surfeit locus 6 (InterPro:IPR007019); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 6 (TAIR:AT5G05210.1); Has 646 Blast hits to 578 proteins in 173 species: Archae - 0; Bacteria - 6; Metazoa - 188; Fungi - 142; Plants - 65; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:11823916..11824461 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21667.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.92 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.37 | ||||||||||||||||||||||||||||
| Length | 181 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKPKFLSLQ EDDTFEKMRQ SRLQKNKRKR DSGLNVFEEV VKDLTYGYMK IGDGDEIYGK HRKKKRVSKA KELEMAMTLE ALKKDQEKGD IVAKNHSWQA 101: AISRAAGIKI HDDPKRLKKR IHKETKMREK NTEKWKERVD VQQKFRAEKQ QKRSENVIDR IQQKKMRKIA KREKKLLRPG Y |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)