AT2G27240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.360 plasma membrane 0.317 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Aluminium activated malate transporter family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; EXPRESSED IN: embryo, sepal, male gametophyte, flower, seed; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: Aluminium activated malate transporter family protein (TAIR:AT1G08440.1); Has 441 Blast hits to 439 proteins in 67 species: Archae - 0; Bacteria - 64; Metazoa - 0; Fungi - 6; Plants - 353; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:11659579..11662408 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56577.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKVREIVRE GRRVAKEDPR RVVHSFKVGL VLALVSSFYY YQPLYDSFGV NAMWAVMTVV VVFEFSVGAT LGKGLNRVAA TLFAGGLGIG AHHLASMSGP 101: TGEPILLAVF VFVQAALSTF VRFFPRVKAR YDYSLLIFIL TFALISVSGF REEQVVKLTH KRISTVIIGG LSCVIISIFV CPVWAGQDLH SLIASNFEKL 201: SFFLLGNSFH YVSSDLNSIT LLRKIKSWRL ADFGDKYCEV VENDGAKEVD KRKKDFDNYK SVLNSKSNEE SLANFAKWEP GHGQFRFRHP WKQYLAVGEL 301: IRQCAYRIHA LNSYLNADNQ VSVDIKKKLG EPLRRMSLES GKAMKEMSIS LKKMTKPSSS DLHVQNAKSA CKSLTNLLNS GILKEVEPLE LVSLLTAISL 401: LIDIINLTEK ILESLHELAT AAKFKNKIEH PLFSEKPKAK SFVSVRSIKC HDDHVVIIIE DDGNNDDTSK NDNGSKEVSI HEKHEDDDTH VDARCVSCGH 501: TSVCVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)