AT2G26980.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CBL-interacting protein kinase 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CBL-interacting protein kinase 3 (CIPK3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), CBL-interacting protein kinase (InterPro:IPR020660), NAF domain (InterPro:IPR004041), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Ca2+regulated serine-threonine protein kinase family protein (TAIR:AT5G21326.1); Has 132116 Blast hits to 129872 proteins in 4353 species: Archae - 194; Bacteria - 15566; Metazoa - 48305; Fungi - 13626; Plants - 31846; Viruses - 527; Other Eukaryotes - 22052 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11515234..11518426 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51826.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.98 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 451 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLIPNKKLRE MNRRQQVKRR VGKYEVGRTI GEGTFAKVKF ARNSETGEPV ALKILDKEKV LKHKMAEQIR REIATMKLIK HPNVVQLYEV MASKTKIFII 101: LEYVTGGELF DKIVNDGRMK EDEARRYFQQ LIHAVDYCHS RGVYHRDLKP ENLLLDSYGN LKISDFGLSA LSQQVRDDGL LHTSCGTPNY VAPEVLNDRG 201: YDGATADMWS CGVVLYVLLA GYLPFDDSNL MNLYKKISSG EFNCPPWLSL GAMKLITRIL DPNPMTRVTP QEVFEDEWFK KDYKPPVFEE RDDSNMDDID 301: AVFKDSEEHL VTEKREEQPA AINAFEIISM SRGLNLENLF DPEQEFKRET RITLRGGANE IIEKIEEAAK PLGFDVQKKN YKMRLENVKA GRKGNLNVAT 401: EIFQVAPSLH MVQVSKSKGD TLEFHKFYKK LSNSLEQVVW TNNEVKKETA K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)