AT2G26280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CTC-interacting domain 7 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
smr (Small MutS Related) domain-containing protein mRNA, complete cds | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CID7; FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 309 Blast hits to 309 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 126; Plants - 79; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11188143..11190579 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62150.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 567 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLTKKASEP KLSGTSIKPT TLNPHAAEFV PFTLRSPSSG GTSTLDTRLL ASSSSVGKAV LDRTESSASH HSDEEARQFW SHQLPDDITP DFGLMTQDDN 101: SYGSGSLSLA NLSLFDGNEA EKFPSASGGY GFSDQTGLAS HNANGNSLAD KSRYPISSFG EDPQRQSFMQ LSPKPWDKQI MNAEQLLGND RERNPFSGKS 201: RHGFVNDMIT ESPGDMEVNP VDFLASQFPG FAAESLAEVY FANGCDLQLT IEMLTQLELQ VDGGLNQNIS PKTYAPPSLT PMDFPALSIS NSHGIPAQFG 301: GDDLQQTGNH YQSPEKDNMF FFKSGPSVSQ PGAIDYVSAV RKLASQDSGM WKYERNDSAD SSIGSSRNSG AYKSGRGRSI YSDKLQSRAQ TRPAPVWVET 401: GDAVGNMYSE LREEARDYAR LRNVYFEQAR QAYLVGNKAL AKELSVKGQL HNMQMKAAHG KAQEAIYRQR NPVGQGNSRG NERMIDLHGL HVSEALQVLK 501: HELSVLRSTA RATQERLQIY ICVGTGHHTR GSRTPARLPV AVQRYLLEEE GLDYSEPQAG LLRVIIY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)